sd doctor [--fix] — check project health and data integrity, and optionally repair what it finds.
Its checks are of two kinds. Setup drift: it verifies all three merge=union lines are present in .gitattributes and backfills any missing one, sourcing the canonical list from seeds-init rather than a hardcoded pair — a real bug class, since a store initialized before plans.jsonl existed silently loses union-merge on plans. Data shape: the extensions-schema check flags any issue whose extensions value is not a plain object (arrays, null, scalars are rejected at write time by seeds-update but can arrive via a hand-edited file or a bad merge); --fix drops them.
A pure pattern-deterministic-gates instance at the tooling level — program-decided verdicts over the store, with an exit code, no model involved. Maps to no canonical SDLC stage: it audits the tracker, not the product. (Contrast gstack-health, which runs the same kind of check over the codebase and therefore does implement stage-review.)
See Also
- seeds-init — the setup this verifies.
- seeds-update — the write-time validation this backstops.
- pattern-deterministic-gates — the pattern it applies.